- Tissue specimens and immunohistochemical detection of DRP1 expression.
This retrospective review was exempt from the requirement for informed consent. The validation cohort consisted of 47 cases selected from the primary cohort based on the following criteria: (1) available follow-up data and samples and (2) a post-operative survival time of more than 1 month. From January 2008 to August 2012, tissue specimens were collected from 47 patients with newly diagnosed GBM. Exclusion criteria: 1. GBM patients with unconfirmed pathology, 2. GBM patients with spinal involvement, 3. GBM patients with incomplete data records. The obtained samples were frozen immediately after surgery with prior consent from the patients. The protocols of this study, including those regarding tissue specimen collection, pathology evaluation, and the assessment of the methylation status of O(6)-methylguanine-DNA methyltransferase (MGMT) promoter and survival, were approved by the Medical Ethics Committee of Taichung Veterans General Hospital (Approval number: CF12026B#2). Tissue microarrays of 35 American GBM samples (GL806, US Biomax, Inc., Rockville, MD, USA) were used to compare DRP1 expression between Taiwanese and American patients. Immunohistological staining was performed on formalin-fixed sections using an LSAB method (DAKO, Carpenteria, CA). The chromogenic reaction was visualized by peroxidase-conjugated streptavidin and aminoethyl carbazole (Sigma, St. Louis, MO) [24, 28, 29, 34, 35]. Slides were evaluated by at least two independent pathologists without knowledge of the given patient’s clinicopathological background. An immune-reaction scoring system was used for scoring [36]. DRP1 expression was assessed in the non-necrotic tumor areas of five separate microscopic fields of view under a magnification of 40X and was classified as the mean of the percentage of DRP1 immunohistochemical positive tumor cells. DRP1 expression was ranked according to the following percentage ranges: <25, 25-50, 51-75, and >75% DRP1-positive tumor cells. The associated kappa statistics revealed a good interobserver agreement of k = 0.81. A specimen was considered to have strong signals when more than 50% of the cancer cells were positively stained; intermediate signals, if 25-50% of the cells were positively stained; weak signals if the percentage of positively stained cells was between 10 and 25%; and negative signals if less than 10% of the cells were positively stained. Cases with strong and intermediate signals (≥ 25% cells positive) were classified as DRP1+, while those with weak or negative DRP1 signals were classified as DRP1–.
- Cell culture and alteration of DRP1 expression using lentivirus-carrying shRNA or ectopic plasmid.
The human GBM cell lines, H4, U87MG, and T98G were obtained from ATCC (Manassas, VA, USA) and grown in Dulbecco modified Eagle medium (DMEM) supplemented with 10% fetal bovine serum (FBS), 4 mM glutamine, 100 U/ml penicillin and 100 μg/ml streptomycin. The cells were routinely tested and authenticated using a PromegaGenePrint® 10 system for human cell line DNA typing (Mission Biotech, Taipei, Taiwan). Among these three cell lines (H4, T98G, and U87 cells), the U87MG and T98G cells have been proven to have lineages consistent with those of human glioblastoma U87MG and T98G cells treated with short tandem repeat (STR) assay performed by Third-party research institution, whiles such testing was not performed for the H4 cells (Supplementary Figs. S6 & S7). The cells were grown to 80% confluence on the day of infection. Lentivirus carrying DRP1 shRNA was prepared using a three-plasmid transfection method [37]. The product lentivirus was used to infect U87MG and T98G cells, and cells with DRP1 gene knockdown (DRP1KD) were selected using 1 μg/ml puromycin. After lentivirus infection including infection with sh-Luc and DRP-1KD, the attached cells were detached by treatment with trypsin and reseeded at 100, 500, 2,000, and 5,000 cells/well of culture plate, respectively. The cells were incubated at 37°C for 10 days, visible colonies that contained more than 50 cells were counted and the plating efficiency was determined. A semi-log graph of the cell survival fractions (that is, the ratio of colonies formed by lentivirus-infected cells to colonies formed by control cells) against radiation dosage was plotted (Fig. 2C).
- Western blotting analysis.
The protocols for western blotting analysis have been described previously [24, 28, 29, 34, 35]. Briefly, 30 μg of total cell lysate was separated on a 10% polyacrylamide gel with a 4.5% stacking gel. After electrophoresis, proteins were transferred to a nitrocellulose membrane. The membrane was probed with specific antibodies. The proteins were visualized by exposing the membrane to an X-Omat film with enhanced chemiluminescence reagent (Merck, Darmstadt, Germany). The respective primary antibodies were mouse anti-DRP1 and mouse anti-b-actin. These mouse monoclonal antibodies to DRP1 were home-made and have previously been characterized [24]. The digital images on X-Omat film were processed in Adobe Photoshop 7.0 (http://www.adobe.com/). The results were analyzed and quantified by the Image J software program (NIH, Bethesda, MD).
- Confocal immunofluorescence microscopy.
Purified shikonin (>98%, HPLC) was purchased from Sigma-Aldrich (Saint Louis, Mo). The method for immunofluorescence confocal microscopy has been described previously [24, 28, 29]. Briefly, the cells on slides were fixed with 4% paraformaldehyde for 15 min at room temperature and permeabilized with 0.1% Triton X-100 prior to staining with mouse anti-DRP1. After washing off of the primary antibodies, the slides were incubated with Alexa 488-conjugated goat anti-rabbit IgG (Invitrogen, Grand Island, NY). The nuclei were stained with 4', 6-Diamidino-2-phenylindole (DAPI), and the slides were examined under a laser confocal microscope (Olympus FV-1000, Tokyo, Japan). Images of the cells were analyzed using the FV10-ASW 3.0 software (Tokyo, Japan).
- Colony formation assay and the culture of GBM stem cells.
T98G-shLuc and T98G-DRP1KD cells, U87-shLuc and U87-DRP1KD cells, GSC-shLuc and GSC-DRP1KD cells, were separately treated with 3, 6, or 12 Greys (Gy) of radiation (Varian 21EX linear accelerator, Varian Oncology Systems, Palo Alto, CA). For colony formation assays, after radiation or infection with a lentivirus, the attached cells were detached by treatment with trypsin and reseeded at 100, 500, 2,000, and 5,000 cells/well of culture plate, respectively. The cells were incubated at 37°C for 10 days, visible colonies that contained more than 50 cells were counted and the plating efficiency was determined. Semi-log graphs of the cell survival fractions (that is, the ratio of colonies formed by irradiated cells to colonies formed by control cells) against radiation dosage was plotted. The GSCs were prepared according to at the previously described protocol [38]. In brief, the obtained tissues were washed and enzymatically dissociated into individual cells. The dissociated cells were cultured in neurosphere-conditioned medium using Neurobasal media (Invitrogen, 21103-049) containing N2 and B27 supplements (Invitrogen, 17502-048; 0080085SA), plus human recombinant bFGF and EGF (50 ng/ml each; R&D Systems, 233-FB; 236-EG). After 2 to 4 weeks incubation, serial dilution was performed on the surviving GSCs to select a single cell that was able to grow a new sphere. The glioblastoma stem cells (GSCs), spheroid type, were cultured in neurosphere-conditioned medium (NSC medium).
- The cell mobility of cells across Matrigel assay.
The mobility of infected lentiviruses including both shLuc and DRP-1KD in U87MG and T98G cells was measured with at the modified Boyden chamber containing Matrigel gel (BD Biosciences, USA) [39], with the well of the chamber containing a membrane with 8 μm pores. The Matrigel assay was performed according to the protocol suggested by BD Biosciences. Briefly, a vial of BD MatrigelTM Basement Membrane Matrix (BD-MBM, 356234) was thawed on ice overnight, and then diluted to ½ and ¼ with ice-cold serum-free Dulbecco’s modified Eagle’s medium (DMEM). Five ml of the diluted BD-MBM was spread in a petri dish on ice, before a piece of polycarbonate membrane (with 5.0 µm pore size) was submerged into the suspension mixture. Membrane coating was performed at room temperature for one hour. The membrane was rinsed with serum-free DMEM once and then placed into the Boyden chamber.
The lower chamber contained the 4% FBS medium. 1 ×105 cells were pipeted into the well of the upper chamber at intervals of one hr for 8 hr and then incubated at 37°C for 24 hr in a humidified incubator with 5% CO2. Following complete removal of the non-invading cells, the membrane was lifted from the chamber, and fixed in 100% methanol for 2 min. The cells on the membrane were stained with 1% toluidine blue for 2 min and washed twice with distilled water. After counting the cells, the percent invasion on the membrane was calculated by comparing the experimental group to the control group.
To count the cells in the lower chamber, the medium was carefully removed, and replaced with 100 µl of PBS with WST-1 (BioVision, Mountain View, CA) solution. The reaction was incubated at 37°C for 1-4 hr in a humidified incubator with 5% CO2. Each experiment was done in triplicate, and the optical absorbance (450/620, in a SunriseTM, Tecan, microplate absorbance reader) was measured by coloration of the reacted substrate, which was catalyzed by mitochondrial dehydrogenases. The percent invasion and invasion index in the chamber were calculated by comparing the experimental group to the control group.
A polycarbonate membrane without Matrigel coating was used for cell transfer study.
- Drug sensitivity assay.
Drug-sensitivity was measured by a WST-1 assay [40]. Cells were seeded at 100, 1,000, and 5,000 cells/96-well plates 18 hr prior to drug challenge. Cells were pulse-treated with 4 μM of daunorubicin for 2 hr. The negative control cells were treated with the solvent for the drug. Total survival of the cells was determined at 72 hr after the drug challenge, and percent survival was estimated by dividing the optical absorbance resulting from each experimental group with that of the control group. Each experiment was done in triplicate, and the optical absorbance was measured by the coloration of the reacted substrate, WST-1 (BioVision, Mountain View, CA), which was catalyzed by mitochondrial dehydrogenases.
- Statistical analysis.
Overall survival (OS) was defined as the time from the date of diagnosis to the date of death. Survival curves were plotted using the Kaplan-Meier estimator [41] and the statistical difference in survival between the different groups was compared by a log-rank test [42]. Statistical tests were two-sided, and p < 0.05 was considered significant. The t-test was utilized to compare the numerical differences in clinical parameters. Differences in patients’ performance status, tumor location, and surgical resection status were assessed by c-square or Fisher’s exact test. Analyses of the data were performed using SPSS 10.3 software (Chicago, IL).