1.
Aksenova NP, Konstantinova TN, Golyanovskaya SA, Sergeeva LI, Romanov GA. Hormonal
regulation of tuber formation in potato plants. Russ J Plant Physl. 2012; 59(4):451-466.
2.
Gong M, Luo H, Wang A, Zhou Y, Huang W, Zhu P, He L. Phytohormone Profiling during
tuber development of Chinese yam by ultra-high performance liquid chromatography–triple
quadrupole tandem mass spectrometry. J Plant Growth Regul. 2016; 36(2):362-373.
3.
Matsumoto R, Kikuno H, Shiwachi H, Toyohara H, Takebayashi Y, Jikumaru Y, Kamiya Y.
Growth of vine cuttings and fuctuations of concentrations of endogenous plant hormones
in water yam (Dioscorea alata L.). Trop. Agr. Develop. 2013; 57(1):23-30.
4.
Yoshida Y, Takahashi H, Kanda H, Kanahamaz K. Effect of seed tuber weights on the
development of tubers and flowering spikes in Japanese yams (Dioscorea japonica) grown under different photoperiods and with plant growth regulators. J Jpn Soc Hortic
Sci. 2007; 76(3):230-236.
5.
Chen SW SH, Sanada A and Toyohara H. Theobroxide and day-length effects on the growth
of yam(Dioscorea spp.). J.ISSAAS. 2010; 16(1):22-30.
6.
Shiwachi H, Ayankanmi T, Robert A: Effect of day length on the development of tubers
in yams (Dioscorea spp.). Tropical Science. 2002;42:162-170.
7.
Ovono PO, Kevers C, Dommes J. Axillary proliferation and tuberisation of Dioscorea cayenensis-D-rotundata complex. Plant Cell Tiss Org. 2007; 91(2):107-114.
8.
Chen FQ, Fu Y, Wang DL, Gao X, Wang L. The effect of plant growth regulators and sucrose
on the micropropagation and microtuberization of Dioscorea nipponica Makino. J Plant
Growth Regul. 2007; 26(1):38-45.
9.
Gong MX, Luo HL, Yuan HJ, Wei SQ, Yang XD, He LF. Effects of exogenous gibberellin
and paclobutrazol on tuber expansion and bulbil formation of Chinese yam. Acta Horticulturae
Sinica. 2015; 42(6):1175-1184.
10.
Behera KK, Pani D, Sahoo S, Maharana T, Sethi BK. Effect of GA(3) and urea treatments
on improvement of microtuber production and productivity of different types of planting
material in greater yam (Dioscorea alata L.). Not Bot Horti Agrobo. 2009; 37(2):81-84.
11.
Hamadina EI, Craufurd PQ, Battey NH, Asiedu R. In vitro micro-tuber initiation and
dormancy in yam. Ann Appl Biol. 2010; 157(2):203-212.
12.
Bazabakana R, Wattiez R, Baucher M, Diallo B, Jaziri M. Effect of jasmonic acid on
developmental morphology during in vitro tuberization of Dioscorea alata (L.). Plant Growth Regul. 2003; 40(3):229-237.
13.
Kim S, Jang S, Lee S. Exogenous effect of gibberellins and jasmonate on tuber enlargement
of Dioscorea opposita. Aagronmoy Research. 2005; 3(1):39-44.
14.
Yan H, Yang L, Li Y. Axillary shoot proliferation and tuberization of Dioscorea fordii
Prain et Burk. Plant Cell Tiss Org. 2011; 104(2):193-198.
15.
Liang RF, Li CZ, Zhang J, He LF, Wei BH, Gan XQ, He HY. Changes of matter accumulation
and relative enzymatic activity during yam tuber development. Acta Agronomica Sinica. 2011; 37(5):903-910.
16.
Loko YL, Bhattacharjee R, Agre AP, Dossou-Aminon I, Orobiyi A, Djedatin GL, Dansi
A. Genetic diversity and relationship of Guinea yam (Dioscorea cayenensis Lam.–D. rotundata Poir. complex) germplasm in Benin (West Africa) using microsatellite markers. Genet
Resour Crop Ev. 2017; 64(6):1205-1219.
17.
Girma G, Gedil M, Spillane C. Morphological, SSR and ploidy analysis of water yam
(Dioscorea alata L.) accessions for utilization of aerial tubers as planting materials. Genet Resour
Crop Ev. 2017; 64(2):291-305.
18.
Tamiru M, Yamanaka S, Mitsuoka C, Babil P, Takagi H, Lopez-Montes A, Sartie A, Asiedu
R, Terauchi R. Development of genomic simple sequence repeat markers for yam. Crop
Sci. 2015; 55(5):2191-2200.
19.
Akakpo R, Scarcelli N, Chair H, Dansi A, Djedatin G, Thuillet AC, Rhone B, Francois
O, Alix K, Vigouroux Y. Molecular basis of African yam domestication: analyses of
selection point to root development, starch biosynthesis, and photosynthesis related
genes. BMC Genomics. 2017; 18(1):782.
20.
Zhao X, Zhang X, Guo X, Li S, Han L, Song Z, Wang Y, Li J, Li M. Identification and
validation of reference genes for qRT-PCR studies of gene expression in Dioscorea opposita. Biomed Res Int. 2016.
21.
Kondhare KR, Malankar NN, Devani RS, Banerjee AK. Genome-wide transcriptome analysis
reveals small RNA profiles involved in early stages of stolon-to-tuber transitions
in potato under photoperiodic conditions. BMC Plant Biology. 2018; 18(1):284.
22.
Van Harsselaar JK, Lorenz J, Senning M, Sonnewald U, Sonnewald S. Genome-wide analysis
of starch metabolism genes in potato (Solanum tuberosum L.). BMC Genomics. 2017; 18(1):37.
23.
Gong L, Zhang H, Gan X, Zhang L, Chen Y, Nie F, Shi L, Li M, Guo Z, Zhang G et al. Transcriptome profiling of the potato (Solanum tuberosum L.) plant under drought stress and water-stimulus conditions. Plos One. 2015; 10(5):e0128041.
24.
Shan J, Song W, Zhou J, Wang X, Xie C, Gao X, Xie T, Liu J. Transcriptome analysis
reveals novel genes potentially involved in photoperiodic tuberization in potato.
Genomics. 2013; 102(4):388-396.
25.
Li J, Liang Q, Li C, Liu M, Zhang Y. Comparative transcriptome analysis identifies
putative genes involved in dioscin biosynthesis in Dioscorea zingiberensis. Molecules. 2018; 23(2).
26.
Wu ZG, Jiang W, Mantri N, Bao XQ, Chen SL, Tao ZM. Transciptome analysis reveals flavonoid
biosynthesis regulation and simple sequence repeats in yam (Dioscorea alata L.) tubers. BMC Genomics. 2015; 16:346.
27.
Liu C, Liu X, Xu W, Fu W, Wang F, Gao J, Li Q, Zhang Z, Li J, Wang S. Identification
of miRNAs and their targets in regulating tuberous root development in radish using
small RNA and degradome analyses. 3 Biotech. 2018; 8(7):311.
28.
Lakhotia N, Joshi G, Bhardwaj AR, Katiyar-Agarwal S, Agarwal M, Jagannath A, Goel
S, Kumar A. Identification and characterization of miRNAome in root, stem, leaf and
tuber developmental stages of potato (Solanum tuberosum L.) by high-throughput sequencing. BMC Plant Biology. 2014; 14:6.
29.
Sun YY, Qiu Y, Zhang XH, Chen XH, Shen D, Wang HP, Li XX. Genome-wide identification
of microRNAs associated with taproot development in radish (Raphanus sativus L.). Gene. 2015; 569(1):118-126.
30.
Mallory AC, Bartel DP, Bartel B. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression
of early auxin response genes. Plant Cell. 2005; 17(5):1360-1375.
31.
Sarkar D. Photoperiodic inhibition of potato tuberization: an update. Plant Growth
Regul. 2010; 62(2):117-125.
32.
Martin A, Adam H, Diaz-Mendoza M, Zurczak M, Gonzalez-Schain ND, Suarez-Lopez P. Graft-transmissible
induction of potato tuberization by the microRNA miR172. Development. 2009; 136(17):2873-2881.
33.
Tamiru M, Natsume S, Takagi H, White B, Yaegashi H, Shimizu M, Yoshida K, Uemura A,
Oikawa K, Abe A. Genome sequencing of the staple food crop white Guinea yam enables
the development of a molecular marker for sex determination. BMC Biology. 2017; 15(1):86.
34.
Hu RB, Yu CJ, Wang XY, Jia CL, Pei SQ, He K, He G, Kong YZ, Zhou GK. De novo transcriptome
analysis of miscanthus iutarioriparius identifies candidate genes in rhizome development.
Front Plant Sci. 2017; 8.
35.
Li M, Liang Z, Zeng Y, Jing Y, Wu K, Liang J, He S, Wang G, Mo Z, Tan F. De novo analysis
of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.). BMC Genomics. 2016; 17.
36.
Malhotra N, Sood H, Chauhan RS. Transcriptome-wide mining suggests conglomerate of
genes associated with tuberous root growth and development in Aconitum heterophyllum Wall. 3 Biotech. 2016; 6(2):152.
37.
Yang M, Zhu LP, Pan C, Xu LM, Liu YL, Ke WD, Yang PF. Transcriptomic analysis of the
regulation of rhizome formation in temperate and tropical lotus (Nelumbo nucifera). Sci Rep-Uk. 2015; 5.
38.
Ursache R, Nieminen K, Helariutta Y. Genetic and hormonal regulation of cambial development.
Physiologia plantarum. 2013; 147(1):36-45.
39.
Bhalerao RP, Fischer U. Environmental and hormonal control of cambial stem cell dynamics.
J Exp Bot. 2017; 68(1):79-87.
40.
Nookaraju A, Pandey SK, Upadhyaya CP, Heung JJ, Kim HS, Chun SC, Kim DH, Park SW.
Role of Ca2+-mediated signaling in potato tuberization: An overview. Bot Stud. 2012; 53(2):177-189.
41.
Chen T, Wu X, Chen Y, Li X, Huang M, Zheng M, Baluska F, Samaj J, Lin J. Combined
proteomic and cytological analysis of Ca2+-calmodulin regulation in Picea meyeri pollen tube growth. Plant Physiology. 2009; 149(2):1111-1126.
42.
Feng JL, Yang ZJ, Chen SP, El-Kassaby YA, Chen H. Signaling pathway in development
of Camellia oleifera nurse seedling grafting union. Trees-Struct Funct. 2017; 31(5):1543-1558.
43.
Gargantini PR, Giammaria V, Grandellis C, Feingold SE, Maldonado S, Ulloa RM. Genomic
and functional characterization of StCDPK1. Plant Mol Biol. 2009; 70(1-2):153-172.
44.
Yu XC, Li MJ, Gao GF, Feng HZ, Geng XQ, Peng CC, Zhu SY, Wang XJ, Shen YY, Zhang DP.
Abscisic acid stimulates a calcium-dependent protein kinase in grape berry. Plant
physiology. 2006; 140(2):558-579.
45.
Ulloa RM, Raices M, MacIntosh GC, Maldonado S, Tellez-Inon MT. Jasmonic acid affects
plant morphology and calcium-dependent protein kinase expression and activity in Solanum tuberosum. Physiologia Plantarum. 2002; 115(3):417-427.
46.
Kim MS, Kim HS, Kim YS, Baek KH, Oh HW, Hahn KW, Bae RN, Lee IJ, Joung H, Jeon JH.
Superoxide anion regulates plant growth and tuber development of potato. Plant Cell
Rep. 2007; 26(10):1717-1725.
47.
Kumar Meena M, Kumar Vishwakarma N, Tripathi V, Chattopadhyay D. CBL-interacting protein
kinase 25 contributes to root meristem development. J Exp Bot. 2019; 70(1):133-147.
48.
Cui XY, Du YT, Fu JD, Yu TF, Wang CT, Chen M, Chen J, Ma YZ, Xu ZS. Wheat CBL-interacting
protein kinase 23 positively regulates drought stress and ABA responses. BMC Plant
Biology. 2018; 18.
49.
Hirt H. Connecting oxidative stress, auxin, and cell cycle regulation through a plant
mitogen-activated protein kinase pathway. P Natl Acad Sci USA. 2000; 97(6):2405-2407.
50.
Polyn S, Willems A, De Veylder L. Cell cycle entry, maintenance, and exit during plant
development. Current opinion in plant biology. 2015; 23:1-7.
51.
Guo M, Simmons CR. Cell number counts--the fw2.2 and CNR genes and implications for
controlling plant fruit and organ size. Plant Sci. 2011; 181(1):1-7.
52.
Paque S, Mouille G, Grandont L, Alabadi D, Gaertner C, Goyallon A, Muller P, Primard-Brisset
C, Sormani R, Blazquez MA et al. AUXIN BINDING PROTEIN1 links cell wall remodeling, auxin signaling, and cell expansion
in Arabidopsis. Plant Cell. 2014; 26(1):280-295.
53.
Dong TT, Song WH, Tan CT, Zhou ZL, Yu JW, Han RP, Zhu MK, Li ZY. Molecular characterization
of nine sweet potato (Ipomoea batatas Lam.) MADS-box transcription factors during storage root development and following
abiotic stress. Plant Breeding. 2018; 137(5):790-804.
54.
Song W, Tan C, Zhu M, Xu T, Dong T, Li Z. Cloning and expression Analysis of Stress
Treatments of a MADS-box Transcription Factor in Sweet Potato. Bulletin of Botanical
Research. 2017; 37(4):587-595,627.
55.
de Lucas M, Daviere JM, Rodriguez Falcon M, Pontin M, Iglesias Pedraz JM, Lorrain
S, Fankhauser C, Blazquez MA, Titarenko E, Prat S. A molecular framework for light
and gibberellin control of cell elongation. Nature. 2008; 451(7177):480-484.
56.
Heo J, Chang KS, Kim IA, Lee M, Lee SA, Song S, Lee MM, Lim J. Funneling of gibberellin
signaling by the GRAS transcription regulator SCARECROW-LIKE 3 in the Arabidopsis root. P Natl Acad Sci USA. 2011; 108(5):2166-2171.
57.
Daviere JM, Achard P. A Pivotal Role of DELLAs in Regulating multiple hormone signals.
Mol Plant. 2016; 9(1):10-20.
58.
Li WT, He M, Wang J, Wang YP. Zinc finger protein (ZFP) in plants-A review. Plant
Omics. 2013; 6(6):474-480.
59.
Que F, Wang GL, Li T, Wang YH, Xu ZS, Xiong AS. Genome-wide identification, expansion,
and evolution analysis of homeobox genes and their expression profiles during root
development in carrot. Functional & Integrative Genomics. 2018; 18(6):685-700.
60.
Ponniah SK, Thimmapuram J, Bhide K, Kalavacharla V, Manoharan M. Comparative analysis
of the root transcriptomes of cultivated sweetpotato (Ipomoea batatas L. Lam) and its wild ancestor (Ipomoea trifida Kunth G. Don). BMC Plant Biology. 2017; 17.
61.
Ursache R, Nieminen K, Helariutta Y. Genetic and hormonal regulation of cambial development.
Physiol Plant. 2013; 147(1):36-45.
62.
Zhang Z, Ogawa M, Fleet CM, Zentella R, Hu J, Heo JO, Lim J, Kamiya Y, Yamaguchi S,
Sun T. SCARECROW-LIKE 3 promotes gibberellin signaling by antagonizing master growth
repressor DELLA in Arabidopsis. P Natl Acad Sci USA. 2011; 108(5):2160-2165.
63.
Aydinoglu F, Lucas SJ. Identification and expression profiles of putative leaf growth
related microRNAs in maize (Zea mays L.) hybrid ADA313. Gene. 2019; 690:57-67.
64.
Yang S, Wang J, Chen Z, Tian X, Zhang J, Long Y, Pei X, Yuan Q. Clone and function
analysis miR160f in common wild rice(Oryza rufipogon Griff.). Biotechnology Bulletin. 2014(11):114-118.
65.
Bao ML, Bian HW, Zha YL, Li FY, Sun YZ, Bai B, Chen ZH, Wang JH, Zhu MY, Han N. miR396a-mediated
masic helix-loop-helix transcription factor bHLH74 repression acts as a regulator
for root growth in Arabidopsis seedlings. Plant and Cell Physiology. 2014; 55(7):1343-1353.
66.
Casadevall R, Rodriguez RE, Debernardi JM, Palatnik JF, Casati P. Repression of growth
regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation
in Arabidopsis leaves. Plant Cell. 2013; 25(9):3570-3583.
67.
Shi M, Hu X, Wei Y, Hou X, Yuan X, Liu J, Liu Y. Genome-wide profiling of small RNAs
and degradome revealed conserved regulations of miRNAs on auxin-responsive genes during
fruit enlargement in peaches. Int J Mol Sci. 2017; 18(12).
68.
Manna A, De Sarkar S, De S, Bauri AK, Chattopadhyay S, Chatterjee M. Impact of MAPK
and PI3K/AKT signaling pathways on Malabaricone-A induced cytotoxicity in U937, a
histiocytic lymphoma cell line. International immunopharmacology. 2016; 39:34-40.
69.
Villasuso AL, Racagni GE, Machado EE. Phosphatidylinositol kinases as regulators of
GA-stimulated alpha-amylase secretion in barley (Hordeum vulgare). Physiologia plantarum. 2008; 133(2):157-166.
70.
Liu Z, Wang B, He R, Zhao Y, Miao L. Calcium signaling and the MAPK cascade are required
for sperm activation in Caenorhabditis elegans. Biochimica Et Biophysica Acta-Molecular
Cell Research. 2014; 1843(2):299-308.
71.
Feng SH, Martinez C, Gusmaroli G, Wang Y, Zhou JL, Wang F, Chen LY, Yu L, Iglesias-Pedraz
JM, Kircher S et al. Coordinated regulation of Arabidopsis thaliana development by light and gibberellins. Nature. 2008; 451(7177):475-U479.
72.
Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. The Sanger FASTQ file format for sequences
with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 2010; 38(6):1767-1771.
73.
Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nature Methods. 2012; 9(4):357-359.
74.
Nawrocki EP, Eddy SR. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 2013; 29(22):2933-2935.
75.
Nawrocki EP, Burge SW, Bateman A, Daub J, Eberhardt RY, Eddy SR, Floden EW, Gardner
PP, Jones TA, Tate J et al. Rfam 12.0: updates to the RNA families database. Nucleic acids research. 2015; 43(Database issue):D130-137.
76.
Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel
D, Ohler U, Benfey PN. High-resolution experimental and computational profiling of
tissue-specific known and novel miRNAs in Arabidopsis. Genome research. 2012; 22(1):163-176.
77.
Wu HJ, Ma YK, Chen T, Wang M, Wang XJ. PsRobot: a web-based plant small RNA meta-analysis
toolbox. Nucleic acids research. 2012; 40(Web Server issue):W22-28.
78.
Wang L, Feng Z, Wang X, Zhang X. DEGseq: an R package for identifying differentially
expressed genes from RNA-seq data. Bioinformatics. 2010; 26(1):136-138.